equal contribution

* corresponding author

Motta S, Minici C, Corrada D, Bonati L*, Pandini A* "Ligand-induced perturbation of the HIF-2α:ARNT dimer dynamics" PLOS Comput Biol doi:10.1317/journal.pcbi.1006021 PubMed URL Tiberti M, Pandini A, Fraternali F, Fornili A "In silico identification of rescue sites by double force scanning" Bioinformatics 34(2):207-214, 2018 PubMed URL DFS Pernigo S, Fukuzawa A, Beedle AEM, Holt M, Round A, Pandini A, Garcia-Manyes S, Gautel M, Steiner RA "Structural trans-complementation provides isoform-specific mechanical protection to the myomesin-dependent integration of obscurin-like-1 at the muscle M-band" Structure 25 (1):107-120, 2017 PubMed URL Pandini A, Morcos F, Khan S "The gearbox of the bacterial flagellar motor switch" Structure 24 (7):1209-1220, 2016 PubMed URL Pandini A, Fornili A "Using Local States to Drive the Sampling of Global Conformations in Proteins" J Chem Theory Comput 12 (3):1368–1379, 2016 PubMed URL CVSA Pandini A, Kleinjung J, Rasool S, Khan S "Coevolved mutations reveal distinct architectures for two core proteins in the bacterial flagellar motor" PLOS ONE 10(11):e0142407, 2015 PubMed URL Pandini A, Kleinjung J, Taylor WR, Junge W, Khan S "The phylogenetic signature underlying ATP Synthase c-ring compliance" Biophys J 109(5):975-987, 2015 Pubmed URL Chung SS☯, Pandini A☯, Annibale A, Coolen ACC, Thomas NS, Fraternali F "Bridging Topological and Functional Information in Protein Interaction Networks by Short Loops Profiling" Sci Rep 5:8540, 2015 PubMed URL Pernigo S, Fukuzawa A, Pandini A, Holt M, Kleinjung J, Gautel M, Steiner RA "The Crystal Structure of the Human Titin:Obscurin Complex Reveals a Conserved yet Specific Muscle M-Band Zipper Module" J Mol Biol 427(4):718-736, 2015 PubMed URL Buffa P☯, Romano C☯, Pandini A☯, Massimino M, Tirrò E, Di Raimondo F, Manzella L, Fraternali F, Vigneri PG "BCR-ABL residues interacting with ponatinib are critical to preserve the tumorigenic potential of the oncoprotein" FASEB J 28(3):1221–1236, 2014 PubMed URL Fornili A, Pandini A, Lu H-C, Fraternali F "Specialized Dynamical Properties of Promiscuous Residues Revealed by Simulated Conformational Ensembles" J Chem Theory Comput 9(12):5127-5147, 2013 PubMed URL Pandini A*, Fornili A, Fraternali F, Kleinjung J "GSATools: analysis of allosteric communication and functional local motions using a Structural Alphabet" Bioinformatics 29(16):2053-2055, 2013 PubMed URL GSATools Pandini A*, Fraccalvieri D, Bonati L "Artificial Neural Networks for Efficient Clustering of Conformational Ensembles and their Potential for Medicinal Chemistry" Curr Top Med Chem 13(5):642-51, 2013 PubMed URL Pandini A☯*, Fornili A☯, Fraternali F, Kleinjung J "Detection of allosteric signal transmission by information-theoretic analysis of protein dynamics" FASEB J 26(2):868-81, 2012 PubMed URL
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